Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs71411869 chr2:87027603 A/G 6.71E-8 502 32.82 28.23 32.1 KM Plot
THCA rs71475924 chr11:47603006 C/T 1.1E-7 490 31.57 30.37 33.7 KM Plot
THCA rs71517761 chr1:152901128 T/A 0.000135 502 31.42 35.67 37.7 KM Plot
THCA rs71532525 chr7:32778301 G/A 0.00012 490 31.47 32.9 31.97 KM Plot
THCA rs71532529 chr7:32796417 G/C 9.65E-5 501 31.45 31.67 31.97 KM Plot
THCA rs71559254 chr7:32768717 C/CCGCCGGGG 0.000109 494 31.45 32.3 31.97 KM Plot
THCA rs71559255 chr7:32768937 ATGT/A 0.000102 497 31.47 32.3 31.97 KM Plot
THCA rs71626737 chr1:152901930 A/G 2.89E-5 501 31.33 34.43 37.7 KM Plot
THCA rs71626738 chr1:152906086 G/A 0.000135 501 31.45 34.43 37.7 KM Plot
THCA rs71626739 chr1:152906133 T/C 0.000135 501 31.45 34.43 37.7 KM Plot
THCA rs71626740 chr1:152920663 A/G 0.000139 500 31.43 34.43 37.7 KM Plot
THCA rs71626743 chr1:152941289 A/G 0.000152 495 31.47 33.3 37.7 KM Plot
THCA rs71626744 chr1:152972016 G/A 0.000141 501 31.53 32.37 37.7 KM Plot
THCA rs71626746 chr1:152988568 G/A 0.000138 500 31.7 31.33 37.7 KM Plot
THCA rs71634371 chr1:3701832 C/A 8.86E-5 493 31.53 32.9 19.73 KM Plot